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Table 6 Detected hydrogen bonds of sheet and coil residues

From: Protein secondary structure prediction using a small training set (compact model) combined with a Complex-valued neural network approach

 

MM

MH

MM + MH

\(\frac {MM}{(MM+MH)}\) (%)

\(\frac {MH}{(MM+MH)}\) (%)

All

No. of residues

R CC

10345

14690

25035

41.3

58.7

78700

19182

R CE

1685

1898

3583

47.0

53.0

10652

2584

R EC

3972

2303

6275

63.3

36.7

17052

3193

R EE

15143

5732

20875

72.5

27.5

51286

10370

  1. Types of hydrogen bond contacts considered are from Main-chain to Main-chain (MM) atoms and Main-chain to Hetero-atom Water (MH) atoms. MM + MH is their sum. All indicates all hydrogen bonds including those involving side chains. R ij denotes a residue in native state i predicted as j