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Fig. 5 | BMC Bioinformatics

Fig. 5

From: VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements

Fig. 5

An example workflow showing how libVDJML and VDJML are used with upstream and downstream software packages. Ovals indicate file formats, and rectangles indicate software packages. This workflow shows how raw sequence read data in FASTQ format is processed to generate FASTA-formatted data for input into germline alignment packages, such as IgBLAST and IMGT/High V-QUEST, which each output their own format. These output files can be read by libVDJML for conversion into VDJML format, which can then be taken as input by a variety of downstream programs

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BMC Bioinformatics

ISSN: 1471-2105

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