Table 1 Percentage of correct mapping, actual and expected alignment by aligners
From: Analysis of optimal alignments unfolds aligners’ bias in existing variant profiles
Aligners | Correct mapping % | Actual agreement % | Expected agreement % | p-value |
|---|---|---|---|---|
Bowtie2 | 96 | 99 | 30 | 0.0000546 |
BWA | 93 | 99 | 30 | 0.0000550 |
SHRiMP2 | 97 | 99 | 31 | 0.0001491 |
RazerS | 88 | 75 | 31 | 0.0001631 |
CUSHAW2 | 97 | 70 | 31 | 0.0000562 |
GASSST | 91 | 8 | 17 | 0.0015892 |
Smalt | 96 | 5 | 31 | 0.0003852 |