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Table 1 Percentage of correct mapping, actual and expected alignment by aligners

From: Analysis of optimal alignments unfolds aligners’ bias in existing variant profiles

Aligners Correct mapping % Actual agreement % Expected agreement % p-value
Bowtie2 96 99 30 0.0000546
BWA 93 99 30 0.0000550
SHRiMP2 97 99 31 0.0001491
RazerS 88 75 31 0.0001631
CUSHAW2 97 70 31 0.0000562
GASSST 91 8 17 0.0015892
Smalt 96 5 31 0.0003852