Table 1 Gene count and the minimum, average, and maximum of gene lengths for each of 56 species
From: Phylogenetic tree construction using trinucleotide usage profile (TUP)
Strain (Species) | Gene | Min | Mean | Max |
|---|---|---|---|---|
Count | ||||
Escherichia_coli_O15_7_H7_VT2Sakai | 5361 | 45 | 903.5 | 15876 |
Escherichia_coli_0127_H6_E2348_69 | 4703 | 45 | 929.7 | 9672 |
Escherichia_coli_536 | 4685 | 66 | 934.7 | 9729 |
Escherichia_coli_55989 | 4919 | 45 | 929.4 | 9492 |
Escherichia_coli_BL21_DE3 | 4319 | 36 | 937.5 | 7104 |
Escherichia_coli_BW2952 | 4084 | 45 | 954.8 | 7077 |
Escherichia_coli_B_REL606 | 4209 | 45 | 953.7 | 7152 |
Escherichia_coli_C_ATCC_8739 | 4200 | 75 | 974.7 | 6342 |
Escherichia_coli_E24377A | 4755 | 90 | 907.1 | 6891 |
Escherichia_coli_ED1a | 5123 | 45 | 900.6 | 9492 |
Escherichia_coli_IAI1 | 4443 | 45 | 942.0 | 6444 |
Escherichia_coli_IAI39 | 4892 | 45 | 931.1 | 9492 |
Escherichia_coli_K_12_substr_DH10B | 4200 | 45 | 945.6 | 7104 |
Escherichia_coli_K_12_substr_MG1655 | 4321 | 45 | 946.5 | 7077 |
Escherichia_coli_K_12_substr_W3110 | 4337 | 45 | 950.7 | 8622 |
Escherichia_coli_O157_H7_EC4115 | 5315 | 93 | 873.0 | 7863 |
Escherichia_coli_S88 | 4847 | 45 | 924.0 | 9492 |
Escherichia_coli_SE11 | 4679 | 45 | 929.2 | 5421 |
Escherichia_coli_SMS_3_5 | 4743 | 75 | 935.4 | 8802 |
Escherichia_coli_UMN026 | 4907 | 45 | 942.9 | 20778 |
Escherichia_coli_UTI89 | 5066 | 66 | 911.3 | 9789 |
Escherichia_fergusonii_ATCC_35469 | 4319 | 45 | 954.2 | 21669 |
Neisseria_gonorrhoeae_FA_1090 | 2002 | 111 | 845.4 | 5934 |
Neisseria_meningitidis_053442 | 2020 | 93 | 853.9 | 5364 |
Neisseria_meningitidis_FAM18 | 1975 | 87 | 916.5 | 6090 |
Neisseria_meningitidis_MC58 | 2063 | 69 | 871.9 | 8112 |
Neisseria_meningitidis_Z2491 | 1993 | 93 | 900.1 | 6048 |
Orientia_tsutsugamushi_Boryong | 2179 | 30 | 796.1 | 6900 |
Rickettsia_conorii_Malish_7 | 1374 | 126 | 746.4 | 6066 |
Rickettsia_prowazekii_Madrid_E | 834 | 126 | 1006.9 | 7023 |
Rickettsia_akari_Hartford | 1259 | 63 | 741.9 | 5682 |
Rickettsia_bellii_OSU_85-389 | 1476 | 78 | 831.9 | 4752 |
Rickettsia_bellii_RML369-C | 1429 | 123 | 907.8 | 5946 |
Rickettsia_felis_URRWXCal2 | 1400 | 123 | 889.4 | 9369 |
Rickettsia_rickettsii_Iowa | 1384 | 54 | 701.7 | 5622 |
Rickettsia_rickettsii_Sheila_Smith | 1345 | 63 | 713.4 | 6750 |
Rickettsia_typhi_wilmington | 838 | 75 | 1002.1 | 6996 |
Salmonella_enterica_serovar_Typhi_CT18 | 4395 | 42 | 910.1 | 10875 |
Salmonella_typhimurium_LT2_SGSC1412 | 4451 | 45 | 947.6 | 16680 |
Salmonella_enterica_Choleraesuis | 4445 | 66 | 898.3 | 16680 |
Salmonella_enterica_Paratypi_ATCC_9150 | 4093 | 66 | 924.8 | 13683 |
Shigella_boydii_Sb227 | 4142 | 45 | 880.2 | 4962 |
Shigella_dysenteriae | 4277 | 45 | 789.9 | 4767 |
Shigella_flexneri_2a_301 | 4436 | 42 | 912.4 | 5673 |
Shigella_sonnei_Ss046 | 4224 | 45 | 919.9 | 4962 |
Wolbachia_pipientis_wMel | 1271 | 93 | 857.0 | 8532 |
Wolbachia_pipientis_wBm | 805 | 129 | 899.4 | 8520 |
Yersinia_enterocolitica_8081 | 4060 | 84 | 962.1 | 9486 |
Yersinia_pestis_Angola | 3837 | 114 | 902.1 | 9492 |
Yersinia_pestis_Antiqua | 4167 | 69 | 949.0 | 11118 |
Yersinia_pestis_biovar_Medievalis_91001 | 3895 | 63 | 962.3 | 11133 |
Yersinia_pestis_CO92 | 4008 | 45 | 973.0 | 11118 |
Yersinia_pestis_KIM_10 | 4090 | 45 | 937.8 | 11133 |
Yersinia_pestis_Pestoides_F | 3850 | 87 | 962.9 | 13971 |
Yersinia_pseudotuberculosis_IP32953 | 3974 | 45 | 998.5 | 16872 |
Yersinia_pseudotuberculosis_IP_31758 | 4124 | 48 | 952.2 | 14862 |