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Table 1 Performance of the LSI model on disease or physiology term queries against expert determined gold standards culled from review papers

From: Prioritization, clustering and functional annotation of MicroRNAs using latent semantic indexing of MEDLINE abstracts

Name

# Terms in

# miRNAs in

AUC

 

query

Gold Std.

 

Cholesterol Homeostasis [33]

2

19

0.94496

Endothelium (endothelial) [34]

2

43

0.83294

Adipogenesis [35]

1

18

0.92189

Macrophage [36]

1

9

0.93975

HDL high density lipoprotein [37]

4

13

0.83344

Asthma [38]

1

9

0.87289

COPD Chronic obstructive pulmonary disease [38]

5

8

0.80491

Cystic Fibrosis [38]

2

10

0.93897

Idiopathic pulmonary fibrosis [38]

3

8

0.90993

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BMC Bioinformatics

ISSN: 1471-2105

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