Table 4 The number of unique genes in top 50 highly discriminative subnetwork markers from GSE2034 and NKI295
Gene expression dataset = GSE2034 | |||||
Chuang | HPRD | GASOLINE | Biogrid | ||
Greedy | 130 | 121 | 140 | 139 | |
AP-based | 1814 | 1789 | 1709 | 1939 | |
jac_p | 903 | 997 | 979 | 1450 | |
kul_p | 1058 | 1266 | 1124 | 1814 | |
tve_p | 1724 | 2263 | 2299 | 3090 | |
jac_lc | β=0.25 | 915 | 1068 | 1157 | 1700 |
β=0.5 | 754 | 769 | 822 | 1212 | |
β=0.75 | 664 | 817 | 672 | 959 | |
kul_lc | β=0.25 | 1200 | 1507 | 1434 | 1951 |
β=0.5 | 949 | 1143 | 1209 | 1916 | |
β=0.75 | 803 | 956 | 1042 | 1549 | |
tve_lc | β=0.25 | 1705 | 2329 | 2172 | 2677 |
β=0.5 | 1449 | 2190 | 2275 | 3562 | |
β=0.75 | 1146 | 2239 | 2316 | 4133 | |
Gene expression dataset = NKI295 | |||||
Chuang | HPRD | GASOLINE | Biogrid | ||
Greedy | 114 | 110 | 118 | 150 | |
AP-based | 1567 | 1516 | 1439 | 1733 | |
jac_p | 731 | 800 | 947 | 1386 | |
kul_p | 615 | 1125 | 1345 | 1667 | |
tve_p | 1411 | 2112 | 2495 | 2855 | |
jac_lc | β=0.25 | 757 | 840 | 983 | 1503 |
β=0.5 | 669 | 622 | 684 | 1133 | |
β=0.75 | 577 | 644 | 539 | 899 | |
kul_lc | β=0.25 | 740 | 1230 | 1353 | 1963 |
β=0.5 | 795 | 925 | 1164 | 1698 | |
β=0.75 | 685 | 856 | 861 | 1357 | |
tve_lc | β=0.25 | 1538 | 2089 | 2433 | 2622 |
β=0.5 | 1363 | 2081 | 2535 | 3644 | |
β=0.75 | 926 | 2161 | 2412 | 4071 | |