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Table 3 Summary of results for NGS resequencing datasets analyzed with the PGen workflow

From: PGen: large-scale genomic variations analysis workflow and browser in SoyKB

Datasets # of sequenced lines # of SNPs # of Indels # of Non synonymous SNPs # of CNVs
MSMC 106 10,218,141 10,218,141 297,245 3,330
USB Phase I 300 11,972,497 1,590,729 221,013 7,444
USB Phase II 50 7,865,994 1,213,795 152,171 6,892
Soja lines 45 18,066,361 2,198,125 356,129 6,022
Brazilian lines 28 5,835,185 1,329,844 541,762 3,880
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