Table 3 Summary of results for NGS resequencing datasets analyzed with the PGen workflow
From: PGen: large-scale genomic variations analysis workflow and browser in SoyKB
Datasets | # of sequenced lines | # of SNPs | # of Indels | # of Non synonymous SNPs | # of CNVs |
|---|---|---|---|---|---|
MSMC | 106 | 10,218,141 | 10,218,141 | 297,245 | 3,330 |
USB Phase I | 300 | 11,972,497 | 1,590,729 | 221,013 | 7,444 |
USB Phase II | 50 | 7,865,994 | 1,213,795 | 152,171 | 6,892 |
Soja lines | 45 | 18,066,361 | 2,198,125 | 356,129 | 6,022 |
Brazilian lines | 28 | 5,835,185 | 1,329,844 | 541,762 | 3,880 |