Table 1 Example of an alignment of amino acid sequences of protein descriptors from the same group (the group founder is descriptor d1p1da2_A_206_LEU, see also Fig. Sf2 in Additional file 1)
From: Structural alignment of protein descriptors – a combinatorial model
Descriptor name | Segment 1 | Segment 2 | Segment 3 | Segment 4 | Segment 5 | Segment 6 |
|---|---|---|---|---|---|---|
d1p1da2_A_206_LEU | FHVKLPK | LGITI | DPLVISD | SVAHRTGTLEL | DKLLAIDN | QILQQCEDLVKLKIRK |
d1q3oa__A_679_VAL | KTVLLQK | FGFVL | ..QYLES | GVAWR.AGLRM | DFLIEVNG | NMIRQ..NTLMVKVVM |
d1y7na1_A_84_MET | TTVLIRR | LGFSV | ..GIICS | GIAER.GGVRV | HRIIEING | HILSN..GEIHMKTMP |
d1x6da1_A_98_ILE | HVTILHK | AGLGF | ..ITVHR | GLASQ.GTIQK | NEVLSING | RQARE..RQAVIVTRK |
d1v62a__A_96_LEU | ..VEIVK | LGISL | ..ITIDR | SVVDR.GALHP | DHILSIDG | KLLASISEKVRLEILP |
d1w9ea1_A_188_MET | REVILCK | LRLKS | ..IFVQL | SPASL.VGLRF | DQVLQING | KVLKQ..EKITMTIRD |
d2cssa1_A_110_ILE | GRVILNK | LKVVG | ..AFITK | SLADVVGHLRA | DEVLEWNG | NIILE..PQVEIIVSR |
d1uf1a__A_98_LEU | KKVNLVL | LTIRG | ..IYITG | SEAEG.SGLKV | DQILEVNG | RLLKS..RHLILTVKD |