Table 2 Performance comparison between rapidGSEA and broadGSEA
From: rapidGSEA: Speeding up gene set enrichment analysis on multi-core CPUs and CUDA-enabled GPUs
H (50) | 1,024 | 4,096 | 16,384 | 65,536 | 262,144 | 1,048,576 | ||||||
broad Xeon | 83.6 | 307.1 | 1,149.0 | 4,681.0 | 18,301.0 | 70,946.8 | ||||||
rapid Xeon | 3.0 | (28) | 7.0 | (44) | 22.7 | (51) | 85.8 | (55) | 339.4 | (54) | 1,357.8 | (52) |
rapid Tesla | 1.8 | (45) | 2.7 | (112) | 6.5 | (176) | 21.9 | (214) | 83.7 | (219) | 329.9 | (215) |
rapid Titan | 1.6 | (54) | 1.9 | (164) | 3.1 | (367) | 8.3 | (564) | 28.2 | (648) | 105.2 | (674) |
C2 (4,725) | 1,024 | 4,096 | 16,384 | 65,536 | 262,144 | 1,048,576 | ||||||
broad Xeon | 1,113.0 | 4,600.0 | 17,962.0 | 70,213.4 | [274,464.0] | [1,072,878.9] | ||||||
rapid Xeon | 89.3 | (12) | 282.9 | (16) | 1,084.8 | (17) | 4,266.2 | (16) | 17,069.0 | (16) | 68,682.3 | (16) |
rapid Tesla | 13.1 | (85) | 31.6 | (146) | 108.5 | (166) | 418.7 | (168) | 1,685.5 | (163) | 6,732.6 | (159) |
rapid Titan | 10.3 | (108) | 20.8 | (221) | 61.9 | (290) | 214.0 | (328) | 895.9 | (306) | 3,447.3 | (311) |