Table 3 Predicted HCEs
HCE type (label) | Count | Description |
|---|---|---|
protein | 8 988 | A protein according to the GenBank annotation |
tRNA | 26 | A transfer RNA |
tRNA-Sec | 1 | Selenocysteine transfer RNA |
LSU_rRNA | 15 | Large subunit ribosomal RNA |
SSU_rRNA | 5 | Small subunit ribosomal RNA |
5_8S_rRNA | 1 | 5.8S ribosomal RNA |
U1 | 1 | U1 spliceosomal RNA |
U2 | 1 | U2 spliceosomal RNA |
ACEA_U3 | 1 | ACEA small nucleolar RNA U3 |
U4 | 1 | U4 spliceosomal RNA |
U5 | 1 | U5 spliceosomal RNA |
U6 | 3 | U6 spliceosomal RNA |
Protozoa_SRP | 1 | Protozoan signal recognition particle RNA (aka 7SL, 6S, 4.5S) |
RNaseP_nuc | 2 | Nuclear ribonuclease P (RNase P) |
snoR07 | 1 | Small nucleolar RNA snoR07 |
snoR10 | 1 | Small nucleolar RNA snoR10 |
SNORD36 | 1 | Small nucleolar RNA SNORD36 |
intron | 163 | Non-coding region of a gene |
unknown UCE | 706 | Not gene nor RNA predicted |
Total | 9919 | Â |