Fig. 4
From: ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline
ChIP layer quality metrics across eight categories. a MACS2 peak calling of All peaks number, peaks number with fold change >= 20, and >= 10 are displayed density distribution for the eight categories with threshold q value 0.01. b Overall FRiP score distributions for ChIP samples (red) and input control samples (cyan) across assay types. c Scatterplot of replicates samples wiggle correlation against peaks overlapping ratio. d Empirically cumulative distributions of the wiggle correlation and peaks overlapping ratio for the replicates consistency