Table 1 Example values for a sample of 10 genes from the library 13276
From: dupRadar: a Bioconductor package for the assessment of PCR artifacts in RNA-Seq data
ID | geneLength | allCounts | filteredCounts | dupRate | dupsPerId | RPK | RPKM |
|---|---|---|---|---|---|---|---|
LOC100288069 | 1371 | 17 | 15 | 0.12 | 2 | 12.40 | 0.60 |
LINC00115 | 1317 | 28 | 28 | 0.00 | 0 | 21.26 | 1.03 |
LOC643837 | 9233 | 281 | 246 | 0.12 | 35 | 30.43 | 1.47 |
FAM41C | 1706 | 1 | 1 | 0.00 | 0 | 0.59 | 0.03 |
LOC100130417 | 496 | 0 | 0 | NA | 0 | 0.00 | 0.00 |
SAMD11 | 2554 | 0 | 0 | NA | 0 | 0.00 | 0.00 |
NOC2L | 2800 | 329 | 273 | 0.17 | 56 | 117.50 | 5.67 |
KLHL17 | 2564 | 2 | 2 | 0.00 | 0 | 0.78 | 0.04 |
ISG15 | 666 | 590 | 271 | 0.54 | 319 | 885.89 | 42.78 |
AGRN | 7326 | 3 | 3 | 0.00 | 0 | 0.41 | 0.02 |