Skip to main content
Fig. 7 | BMC Bioinformatics

Fig. 7

From: RNAdualPF: software to compute the dual partition function with sample applications in molecular evolution theory

Fig. 7

Additional measures for the data described in the previous Fig. 6. Density plots are shown for (1) the base pair distance between the minimum free energy (MFE) structure and the target structure, (2) the GC-content, (3) the free energy E(a,s 0) of the RNA sequences a with respect to the target structure s 0, (4) the free energy E(a,s a ) of each sequence with respect to its own minimum free energy (MFE) structure, (5) the log dual probability \(p^{*}(s_{0}) = \frac {\sum _{\mathbf {x}} \exp (-E(\mathbf {x},s_{0})/RT)}{Z^{*}(s_{0})}\), and (6) the log probability \(p(\mathbf {a}) = \frac {\sum _{s} \exp (-E(\mathbf {a},s)/RT)}{Z(\mathbf {a})}\)

Back to article page