Table 1 Table showing the results at the exon level for the example shown in Fig. 2
From: RGmatch: matching genomic regions to proximal genes in omics data integration
Region | Midpoint | Gene | Transcript | Exon | Area | Distance | PercRegion | PercArea |
|---|---|---|---|---|---|---|---|---|
1_3400_3700 | 3550 | Gene2 | Tr1_Gene2 | 2 | INTRON | 0 | 66.45 | −1 |
1_3400_3700 | 3550 | Gene2 | Tr1_Gene2 | 2 | GENE_BODY | 0 | 33.55 | 6.73 |
1_3400_3700 | 3550 | Gene1 | Tr1_Gene1 | 1 | TSS | 0 | 66.45 | 100.0 |
1_3400_3700 | 3550 | Gene1 | Tr1_Gene1 | 1 | 1st_EXON | 0 | 33.55 | 5.94 |
1_3400_3700 | 3550 | Gene1 | Tr2_Gene1 | 1 | TSS | 0 | 66.45 | 100.0 |
1_3400_3700 | 3550 | Gene1 | Tr2_Gene1 | 1 | 1st_EXON | 0 | 33.55 | 5.94 |
1_5900_6250 | 6075 | Gene2 | Tr1_Gene2 | 1 | 1st_EXON | 0 | 100 | 29.23 |
1_5900_6250 | 6075 | Gene1 | Tr2_Gene1 | 2 | INTRON | 0 | 56.98 | −1 |
1_5900_6250 | 6075 | Gene1 | Tr2_Gene1 | 2 | GENE_BODY | 0 | 43.02 | 37.66 |
2_2102_2702 | 2402 | Gene4 | Tr1_Gene4 | 1 | TSS | 0 | 33.28 | 100.0 |
2_2102_2702 | 2402 | Gene4 | Tr1_Gene4 | 1 | PROMOTER | 0 | 48.42 | 22.38 |
2_2102_2702 | 2402 | Gene4 | Tr1_Gene4 | 1 | 1st_EXON | 0 | 18.30 | 80.88 |
2_2102_2702 | 2402 | Gene3 | Tr1_Gene3 | 1 | TSS | 0 | 33.28 | 100.0 |
2_2102_2702 | 2402 | Gene3 | Tr1_Gene3 | 1 | PROMOTER | 0 | 33.61 | 15.54 |
2_2102_2702 | 2402 | Gene3 | Tr1_Gene3 | 1 | 1st_EXON | 0 | 11.65 | 100 |
2_2102_2702 | 2402 | Gene3 | Tr1_Gene3 | 1 | INTRON | 0 | 21.46 | −1 |