Table 6 Running time to measure semantic similarity between term pairs for three ontologies
From: SGFSC: speeding the gene functional similarity calculation based on hash tables
Method | # of term pairs | BP | MF | CC | |||
|---|---|---|---|---|---|---|---|
# of related terms | Time (s) | # of related terms | Time (s) | # of related terms | Time (s) | ||
Resnik | 106 | 27,864 | 5.9 | 9,943 | 2.5 | 3,817 | 4.4 |
Jiang | 106 | 27,864 | 6.7 | 9,943 | 2.9 | 3,817 | 3.8 |
Lin | 106 | 27,864 | 6.0 | 9,943 | 2.7 | 3,817 | 3.6 |
Wang | 106 | 27,864 | 6.2 | 9,943 | 2.6 | 3,817 | 4.1 |
Pekar | 106 | 27,864 | 5.8 | 9,943 | 2.6 | 3,817 | 3.7 |