Fig. 1From: PSE-HMM: genome-wide CNV detection from NGS data using an HMM with Position-Specific Emission probabilitiesMate pairs that are taken as the observation for the 2nd genomic segment are shown. A mate pair whose reads are flanking the 2nd segment and its insertion region is spanning the segment, accounts for the observation in the 2nd genomic segment. Other reads that do not satisfy these conditions are discardedBack to article page