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Table 5 Arithmetic and harmonic means of F-measures

From: PSE-HMM: genome-wide CNV detection from NGS data using an HMM with Position-Specific Emission probabilities

 

Coverage

1×

5×

10×

Arithmetic mean

PSE-HMM

0.72

0.89

0.91

m-HMM

0.62

0.87

0.90

Pindel

0.38

0.76

0.82

CNV-seq

0.71

0.87

0.89

Delly

0.77

0.87

0.87

Harmonic mean

PSE-HMM

0.66

0.88

0.91

m-HMM

0.53

0.87

0.89

Pindel

0.09

0.71

0.78

CNV-seq

0.66

0.85

0.87

Delly

0.71

0.84

0.84

  1. For PSE-HMM, m-HMM, Pindel, CNV-seq, and Delly, arithmetic and harmonic means of F-measures are calculated over different HMM states i.e. tandem-duplications, deletions (either heterozygous or homozygous), and genomic diploid states. The highest accuracies are indicated in bold, for coverages of 5× and 10×