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Table 5 Arithmetic and harmonic means of F-measures

From: PSE-HMM: genome-wide CNV detection from NGS data using an HMM with Position-Specific Emission probabilities

  Coverage
10×
Arithmetic mean PSE-HMM 0.72 0.89 0.91
m-HMM 0.62 0.87 0.90
Pindel 0.38 0.76 0.82
CNV-seq 0.71 0.87 0.89
Delly 0.77 0.87 0.87
Harmonic mean PSE-HMM 0.66 0.88 0.91
m-HMM 0.53 0.87 0.89
Pindel 0.09 0.71 0.78
CNV-seq 0.66 0.85 0.87
Delly 0.71 0.84 0.84
  1. For PSE-HMM, m-HMM, Pindel, CNV-seq, and Delly, arithmetic and harmonic means of F-measures are calculated over different HMM states i.e. tandem-duplications, deletions (either heterozygous or homozygous), and genomic diploid states. The highest accuracies are indicated in bold, for coverages of 5× and 10×
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