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Table 6 Leukemia gene expression results

From: Unsupervised gene set testing based on random matrix theory

Gene set Direction GSE Unweighted MLRT SGSE TWT MPDT
   p-value q-value wFDR wFDR wFDR wFDR
*GSE10325_{B}CELL_{V}S_{M}YELOID_{U}P (124) ALL 0.00225 0.999 0.655 0.711 0.0969 1
*GSE29618_{B}CELL_{V}S_{M}ONOCYTE_{D}AY … (130) ALL 0.00302 0.999 0.655 0.711 0.0969 1
GSE29618_{B}CELL_{V}S_{M}DC_{D}AY7_{F}LU … (126) ALL 0.0046 0.999 0.655 0.729 0.574 1
GSE10325_{C}D4_{T}CELL_{V}S_{B}CELL_{D}N (132) ALL 0.005 0.999 1 0.711 0.574 1
*GSE10325_{L}UPUS_{B}CELL_{V}S_{L}UPUS_ … (123) ALL 0.00563 0.999 0.431 0.711 0.12 1
GSE29618_{B}CELL_{V}S_{M}DC_{U}P (133) ALL 0.00719 0.999 0.655 0.955 0.574 1
GSE29618_{B}CELL_{V}S_{M}ONOCYTE_{U}P (108) ALL 0.00776 0.999 0.655 0.711 0.574 1
GSE29618_{B}CELL_{V}S_{M}ONOCYTE_{D}AY … (143) AML 0.0137 0.999 0.655 0.711 0.574 1
GSE24634_{T}REG_{V}S_{T}CONV_{P}OST_{D}A … (123) AML 0.0162 0.999 1 0.711 1 1
GSE6269_{H}EALTHY_{V}S_{S}TREP_{A}UREU … (133) AML 0.0168 0.999 0.655 0.711 0.574 1
GSE29618_{B}CELL_{V}S_{M}DC_{D}AY7_{F}LU … (126) AML 0.0171 0.999 0.655 0.711 1 1
GSE6269_{H}EALTHY_{V}S_{S}TREP_{P}NEUM … (134) AML 0.0174 0.999 0.655 0.711 0.742 1
GSE15767_{M}ED_{V}S_{S}CS_{M}AC_{L}N_{U}P (117) AML 0.0229 0.999 1 0.711 1 1
GSE6269_{E}_COLI_{V}S_{S}TREP_{A}UREUS … (130) AML 0.0245 0.999 1 0.711 1 1
GSE22886_{N}AIVE_{C}D8_{T}CELL_{V}S_{N}E … (122) AML 0.0295 0.999 1 0.729 1 1
GSE6269_{F}LU_{V}S_{E}_COLI_{I}NF_{P}BMC … (128) AML 0.0306 0.999 1 0.711 1 1
GSE29618_{M}ONOCYTE_{V}S_{P}DC_{U}P (126) AML 0.0333 0.999 0.659 0.711 0.706 1
GSE6269_{H}EALTHY_{V}S_{S}TREP_{A}UREU … (109) ALL 0.0353 0.999 0.906 0.907 0.592 1
GSE3982_{M}EMORY_{C}D4_{T}CELL_{V}S_{B}C … (73) ALL 0.0361 0.999 1 0.995 1 1
GSE360_{C}TRL_{V}S_{M}_TUBERCULOSIS_ … (71) AML 0.0364 0.999 1 0.711 1 1
GSE11057_{E}FF_{M}EM_{V}S_{C}ENT_{M}EM_{C} … (85) AML 0.0381 0.999 1 0.729 1 1
GSE10325_{L}UPUS_{B}CELL_{V}S_{L}UPUS_ … (88) AML 0.0384 0.999 0.655 0.711 0.998 1
GSE360_{C}TRL_{V}S_{L}_DONOVANI_{D}C_{D} … (75) AML 0.0403 0.999 1 0.729 1 1
GSE22886_{N}AIVE_{C}D4_{T}CELL_{V}S_{N}E … (92) AML 0.0403 0.999 1 0.758 1 1
GSE3982_{C}TRL_{V}S_{P}MA_{S}TIM_{E}OSIN … (93) AML 0.0427 0.999 1 0.711 1 1
  1. Results for the MSigDB C7 v5.0 collection and the Armstrong et al. [34] leukemia gene expression data (1910 total gene sets after size-based filtering). Significant q-values are marked in bold with a *before the gene set name