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Table 7 p53 gene expression results

From: Unsupervised gene set testing based on random matrix theory

Gene set Direction GSE Unweighted MLRT SGSE TWT MPDT
   p-value q-value wFDR wFDR wFDR wFDR
P53_DN.V1_UP (10) MUT 5.21e-09 9.79e-07 1.43e-07 6.53e-07 1.31e-06 1.09e-05
P53_DN.V1_DN (14) WT 8.67e-07 8.15e-05 1.19e-05 9.56e-05 6.96e-06 1.09e-05
RB_P130_DN.V1_DN (123) MUT 0.0342 0.914 1 0.505 1 1
BCAT.100_UP.V1_UP (103) MUT 0.0385 0.914 1 0.517 1 1
VEGF_A_UP.V1_DN (114) MUT 0.0432 0.914 0.315 0.505 0.231 1
EGFR_UP.V1_DN (136) MUT 0.046 0.914 0.315 0.505 1 0.989
RB_DN.V1_DN (110) MUT 0.056 0.914 1 0.505 1 1
CORDENONSI_YAP_CONSERVED_SIGNA… (124) MUT 0.0593 0.914 0.324 0.505 0.238 0.208
RAF_UP.V1_UP (98) MUT 0.0597 0.914 0.873 0.505 1 1
SRC_UP.V1_UP (98) WT 0.0604 0.914 1 1 1 1
RPS14_DN.V1_DN (98) MUT 0.0651 0.914 1 0.734 1 0.208
HOXA9_DN.V1_DN (105) MUT 0.0685 0.914 1 0.505 1 1
CSR_EARLY_UP.V1_UP (159) MUT 0.0719 0.914 0.958 0.505 1 1
TBK1.DF_DN (150) MUT 0.0797 0.914 1 0.56 1 1
EGFR_UP.V1_UP (17) MUT 0.0832 0.914 0.332 0.517 1 1
MEK_UP.V1_UP (9) MUT 0.085 0.914 0.332 0.505 1 1
*GCNP_SHH_UP_EARLY.V1_UP (170) MUT 0.0875 0.914 0.958 1 0.281 1
ESC_J1_UP_EARLY.V1_DN (156) MUT 0.0899 0.914 1 0.734 1 1
ERB2_UP.V1_UP (170) MUT 0.103 0.914 1 0.56 1 1
KRAS.300_UP.V1_UP (155) WT 0.108 0.914 1 0.994 1 1
BRCA1_DN.V1_UP (64) WT 0.125 0.914 1 1 1 1
AKT_UP.V1_UP (87) MUT 0.127 0.914 1 0.821 1 1
ERB2_UP.V1_DN (90) MUT 0.13 0.914 0.444 0.56 1 1
STK33_SKM_DN (97) MUT 0.139 0.914 1 0.56 1 1
ALK_DN.V1_UP (100) WT 0.146 0.914 1 1 1 1
  1. Results for the MSigDB C6 v5.0 collection and p53 [4] gene expression data (188 total gene sets after size-based filtering). Significant q-values are marked in bold with a *before the gene set name