From: Unsupervised gene set testing based on random matrix theory
Gene set | Direction | GSE | Unweighted | MLRT | SGSE | TWT | MPDT |
---|---|---|---|---|---|---|---|
p-value | q-value | wFDR | wFDR | wFDR | wFDR | ||
∗ P53_DN.V1_UP (10) | MUT | 5.21e-09 | 9.79e-07 | 1.43e-07 | 6.53e-07 | 1.31e-06 | 1.09e-05 |
∗ P53_DN.V1_DN (14) | WT | 8.67e-07 | 8.15e-05 | 1.19e-05 | 9.56e-05 | 6.96e-06 | 1.09e-05 |
RB_P130_DN.V1_DN (123) | MUT | 0.0342 | 0.914 | 1 | 0.505 | 1 | 1 |
BCAT.100_UP.V1_UP (103) | MUT | 0.0385 | 0.914 | 1 | 0.517 | 1 | 1 |
∗ VEGF_A_UP.V1_DN (114) | MUT | 0.0432 | 0.914 | 0.315 | 0.505 | 0.231 | 1 |
EGFR_UP.V1_DN (136) | MUT | 0.046 | 0.914 | 0.315 | 0.505 | 1 | 0.989 |
RB_DN.V1_DN (110) | MUT | 0.056 | 0.914 | 1 | 0.505 | 1 | 1 |
∗ CORDENONSI_YAP_CONSERVED_SIGNA… (124) | MUT | 0.0593 | 0.914 | 0.324 | 0.505 | 0.238 | 0.208 |
RAF_UP.V1_UP (98) | MUT | 0.0597 | 0.914 | 0.873 | 0.505 | 1 | 1 |
SRC_UP.V1_UP (98) | WT | 0.0604 | 0.914 | 1 | 1 | 1 | 1 |
∗ RPS14_DN.V1_DN (98) | MUT | 0.0651 | 0.914 | 1 | 0.734 | 1 | 0.208 |
HOXA9_DN.V1_DN (105) | MUT | 0.0685 | 0.914 | 1 | 0.505 | 1 | 1 |
CSR_EARLY_UP.V1_UP (159) | MUT | 0.0719 | 0.914 | 0.958 | 0.505 | 1 | 1 |
TBK1.DF_DN (150) | MUT | 0.0797 | 0.914 | 1 | 0.56 | 1 | 1 |
EGFR_UP.V1_UP (17) | MUT | 0.0832 | 0.914 | 0.332 | 0.517 | 1 | 1 |
MEK_UP.V1_UP (9) | MUT | 0.085 | 0.914 | 0.332 | 0.505 | 1 | 1 |
*GCNP_SHH_UP_EARLY.V1_UP (170) | MUT | 0.0875 | 0.914 | 0.958 | 1 | 0.281 | 1 |
ESC_J1_UP_EARLY.V1_DN (156) | MUT | 0.0899 | 0.914 | 1 | 0.734 | 1 | 1 |
ERB2_UP.V1_UP (170) | MUT | 0.103 | 0.914 | 1 | 0.56 | 1 | 1 |
KRAS.300_UP.V1_UP (155) | WT | 0.108 | 0.914 | 1 | 0.994 | 1 | 1 |
BRCA1_DN.V1_UP (64) | WT | 0.125 | 0.914 | 1 | 1 | 1 | 1 |
AKT_UP.V1_UP (87) | MUT | 0.127 | 0.914 | 1 | 0.821 | 1 | 1 |
ERB2_UP.V1_DN (90) | MUT | 0.13 | 0.914 | 0.444 | 0.56 | 1 | 1 |
STK33_SKM_DN (97) | MUT | 0.139 | 0.914 | 1 | 0.56 | 1 | 1 |
ALK_DN.V1_UP (100) | WT | 0.146 | 0.914 | 1 | 1 | 1 | 1 |