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Table 7 p53 gene expression results

From: Unsupervised gene set testing based on random matrix theory

Gene set

Direction

GSE

Unweighted

MLRT

SGSE

TWT

MPDT

  

p-value

q-value

wFDR

wFDR

wFDR

wFDR

P53_DN.V1_UP (10)

MUT

5.21e-09

9.79e-07

1.43e-07

6.53e-07

1.31e-06

1.09e-05

P53_DN.V1_DN (14)

WT

8.67e-07

8.15e-05

1.19e-05

9.56e-05

6.96e-06

1.09e-05

RB_P130_DN.V1_DN (123)

MUT

0.0342

0.914

1

0.505

1

1

BCAT.100_UP.V1_UP (103)

MUT

0.0385

0.914

1

0.517

1

1

VEGF_A_UP.V1_DN (114)

MUT

0.0432

0.914

0.315

0.505

0.231

1

EGFR_UP.V1_DN (136)

MUT

0.046

0.914

0.315

0.505

1

0.989

RB_DN.V1_DN (110)

MUT

0.056

0.914

1

0.505

1

1

CORDENONSI_YAP_CONSERVED_SIGNA… (124)

MUT

0.0593

0.914

0.324

0.505

0.238

0.208

RAF_UP.V1_UP (98)

MUT

0.0597

0.914

0.873

0.505

1

1

SRC_UP.V1_UP (98)

WT

0.0604

0.914

1

1

1

1

RPS14_DN.V1_DN (98)

MUT

0.0651

0.914

1

0.734

1

0.208

HOXA9_DN.V1_DN (105)

MUT

0.0685

0.914

1

0.505

1

1

CSR_EARLY_UP.V1_UP (159)

MUT

0.0719

0.914

0.958

0.505

1

1

TBK1.DF_DN (150)

MUT

0.0797

0.914

1

0.56

1

1

EGFR_UP.V1_UP (17)

MUT

0.0832

0.914

0.332

0.517

1

1

MEK_UP.V1_UP (9)

MUT

0.085

0.914

0.332

0.505

1

1

*GCNP_SHH_UP_EARLY.V1_UP (170)

MUT

0.0875

0.914

0.958

1

0.281

1

ESC_J1_UP_EARLY.V1_DN (156)

MUT

0.0899

0.914

1

0.734

1

1

ERB2_UP.V1_UP (170)

MUT

0.103

0.914

1

0.56

1

1

KRAS.300_UP.V1_UP (155)

WT

0.108

0.914

1

0.994

1

1

BRCA1_DN.V1_UP (64)

WT

0.125

0.914

1

1

1

1

AKT_UP.V1_UP (87)

MUT

0.127

0.914

1

0.821

1

1

ERB2_UP.V1_DN (90)

MUT

0.13

0.914

0.444

0.56

1

1

STK33_SKM_DN (97)

MUT

0.139

0.914

1

0.56

1

1

ALK_DN.V1_UP (100)

WT

0.146

0.914

1

1

1

1

  1. Results for the MSigDB C6 v5.0 collection and p53 [4] gene expression data (188 total gene sets after size-based filtering). Significant q-values are marked in bold with a *before the gene set name