Table 1 Results of Mascot identification of MS spectra against the annotated genomes of the species
From: Large scale analysis of amino acid substitutions in bacterial proteomics
Species | Strain | Genome NCBI | Total # of | # of identified | # of identified | Mascot threshold | Decoy threshold |
|---|---|---|---|---|---|---|---|
| Â | Â | accession | spectra | spectra | unique peptides | score | score |
H. pylori | A45 | AMYU00000000 | 74800 | 15108 | 6606 | 8 | 8 |
H. pylori | 26695 | NC_018939 | 71801 | 14732 | 6737 | 8 | 8 |
H. pylori | E48 | AYHQ00000000 | 58704 | 14655 | 6506 | 8 | 8 |
H. pylori | J99 | NC_000921 | 68739 | 15279 | 6374 | 8 | 8 |
H. pylori | H13-1 | AYUH00000000 | 64585 | 17554 | 7341 | 8 | 8 |
N. gonorrhoeae | i19.05 | JFBA00000000 | 72851 | 24964 | 6374 | 9 | 6 |
N. gonorrhoeae | n01.08 | JIBZ00000000 | 83672 | 32005 | 6761 | 9 | 6 |
N. gonorrhoeae | FA1090 | NC_002946.2 | 44803 | 11891 | 5072 | 9 | 10 |