Large scale analysis of amino acid substitutions in bacterial proteomics

BMC Bioinformatics

Table 2 Estimation of the number of possible SAP identifications based on the comparison of the whole set of peptides identified for each sample

Subject	# of spectra	# of peptides	Query database	# of spectra	# of peptides	# of peptides with	# of possible peptides
database	in subject	in subject		in query	in query	1 SAP detected	identifications with 1
	database	database		database	database	by genomes	SAP by proteomes
H. pylori 22695	13306	6012	H. pylori J99	13789	5747	4293	630
H. pylori A45	13657	5932	H. pylori 22695	13306	6012	3857	603
H. pylori J99	13789	5747	H. pylori A45	13657	5932	4308	502
H. pylori	40752	10759	H. pylori E48	12440	5529	3446	467
(A45, J99, 26695)
H. pylori	40752	10759	H. pylori H13-1	15194	6402	3322	523
(A45, J99, 26695)
N. gonorrhoeae	10854	4587	N. gonorrhoeae	29462	6606	764	66
FA1090			i19.05
N. gonorrhoeae	10854	4587	N. gonorrhoeae	32815	6453	765	87
FA1090			n01.08

ISSN: 1471-2105