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Table 2 Estimation of the number of possible SAP identifications based on the comparison of the whole set of peptides identified for each sample

From: Large scale analysis of amino acid substitutions in bacterial proteomics

Subject # of spectra # of peptides Query database # of spectra # of peptides # of peptides with # of possible peptides
database in subject in subject   in query in query 1 SAP detected identifications with 1
  database database   database database by genomes SAP by proteomes
H. pylori 22695 13306 6012 H. pylori J99 13789 5747 4293 630
H. pylori A45 13657 5932 H. pylori 22695 13306 6012 3857 603
H. pylori J99 13789 5747 H. pylori A45 13657 5932 4308 502
H. pylori 40752 10759 H. pylori E48 12440 5529 3446 467
(A45, J99, 26695)        
H. pylori 40752 10759 H. pylori H13-1 15194 6402 3322 523
(A45, J99, 26695)        
N. gonorrhoeae 10854 4587 N. gonorrhoeae 29462 6606 764 66
FA1090    i19.05     
N. gonorrhoeae 10854 4587 N. gonorrhoeae 32815 6453 765 87
FA1090    n01.08