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Table 4 Speedup for alignment stages of multithreaded muBLASTP over single-threaded muBLASTP on Haswell platform (with 24 threads) and Nehalem platform (with 12 threads) with query batches of different query length

From: muBLASTP: database-indexed protein sequence search on multicore CPUs

Query length Haswell platform   Nehalem platform  
  uniprot_sprot env_nr nr uniprot_sprot env_nr nr
  Aver SD Aver SD Aver SD Aver SD Aver SD Aver SD
100 19.8 0.013 20.2 0.016 20.0 0.013 10.7 0.014 11.2 0.012 11.6 0.012
500 20.9 0.022 20.6 0.011 21.4 0.017 10.9 0.012 11.5 0.013 11.5 0.012
1000 21.4 0.013 21.2 0.013 21.5 0.012 10.8 0.012 11.3 0.013 11.6 0.018
Mixed 21.4 0.012 21.5 0.017 21.6 0.013 10.9 0.018 11.3 0.018 11.5 0.015
  1. Aver is the average value of three runs, and SD is the standard deviation of three runs
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