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Table 6 End-to-end speedup of multithreaded muBLASTP over single-threaded muBLASTP on Haswell platform (with 24 threads) and Nehalem platform (with 12 threads) with query batches of different query length

From: muBLASTP: database-indexed protein sequence search on multicore CPUs

Query length Haswell platform   Nehalem platform  
  uniprot_sprot env_nr nr uniprot_sprot env_nr nr
  Aver SD Aver SD Aver SD Aver SD Aver SD Aver SD
100 16.2 0.001 16.8 0.002 17.3 0.003 9.2 0.001 9.9 0.001 6.3 0.003
500 20.4 0.002 20.3 0.002 20.5 0.002 11.1 0.004 10.6 0.003 11.1 0.002
1000 19.4 0.002 19.3 0.001 19.6 0.004 10.7 0.002 10.2 0.002 10.9 0.001
Mixed 19.2 0.001 19.1 0.002 19.3 0.003 10.3 0.002 11.1 0.002 10.4 0.002
  1. Aver is the average value of three runs, and SD is the standard deviation of three runs
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