Table 2 Performance and feature recovery of a classical approach versus Genes method of MEvoLib for four sets of hmtDNA sequences
From: MEvoLib v1.0: the first molecular evolution library for Python
Num. Seqs. | Configurations | Time (s) | Mem. (MB) | CDS feat. | rRNA feat. | tRNA feat. | |||
|---|---|---|---|---|---|---|---|---|---|
100 | Gene | 1.56 | 32.37 | 26 | (+13) | 3 | (+1) | 21 | (-1) |
100 | Product | 1.41 | 32.33 | 18 | (+5) | 2 | (0) | 20 | (-2) |
100 | All | 1.42 | 32.46 | 15 | (+2) | 2 | (0) | 20 | (-2) |
1000 | Gene | 13.15 | 91.42 | 26 | (+13) | 5 | (+3) | 43 | (+21) |
1000 | Product | 12.71 | 92.06 | 22 | (+9) | 4 | (+2) | 20 | (-2) |
1000 | All | 13.74 | 92.63 | 15 | (+2) | 2 | (0) | 20 | (-2) |
10000 | Gene | 127.95 | 687.63 | 31 | (+18) | 5 | (+3) | 45 | (+23) |
10000 | Product | 171.80 | 692.59 | 34 | (+21) | 4 | (+2) | 20 | (-2) |
10000 | All | 136.91 | 700.73 | 13 | (0) | 2 | (0) | 20 | (-2) |
31752 | Gene | 412.22 | 2126.83 | 33 | (+20) | 5 | (+3) | 46 | (+24) |
31752 | Product | 467.78 | 2144.32 | 51 | (+38) | 6 | (+4) | 20 | (-2) |
31752 | All | 509.78 | 2177.28 | 13 | (0) | 2 | (0) | 20 | (-2) |