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Fig. 4 | BMC Bioinformatics

Fig. 4

From: DGW: an exploratory data analysis tool for clustering and visualisation of epigenomic marks

Fig. 4

Simulation results for parameter set (v: 0.25, p: 0.25, fp: 0.1). a Left panel shows the dendrogram of clustered peaks using hierarchical clustering only. Peaks assigned to each of five different cluster are shown in yellow, pink, blue, red and green. X axis represents the pairwise distances d. Right panel shows clustered peaks. Colour coding corresponds to normalized read counts. X axis represents original (unwarped) bins from start of the peaks. c Matthews Correlation Coefficient for hierarchical clustering based on a set of simulations with varying parameters (v,p) and fp fixed to 0.1. b and d as a and c but for DGW alignment followed by hierarchical clustering

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