From: DegreeCox – a network-based regularization method for survival analysis
Train | Bonome | TCGA | Tothill | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Test | TCGA | Tothill | Bonome | Tothill | Bonome | TCGA | |||||||
Network | GCN | GFM | GCN | GFM | GCN | GFM | GCN | GFM | GCN | GFM | GCN | GFM | |
40 %PI Thres. | DegreeCox | 2.084E-5 | 2.124E-5 | 0.0013 | 4.390E-4 | 2.046E-4 | 3.990E-4 | 6 . 5 4 7 E − 6 | 5.822E-6 | 9 . 8 3 3 E-5 | 1 . 7 5 7 E-4 | 8.347E-8 | 3.125E-8 |
Net-Cox | 1.082E-4 | 2.791E-5 | 7.726E-4 | 1 . 5 1 4 E-4 | 2.815E-4 | 1.185E-4 | 4.241E-5 | 1 . 4 3 2 E-6 | 1.696E-4 | 2.545E-4 | 7 . 7 1 7 E-9 | 4 . 5 0 3 E-9 | |
Ridge | 1 . 5 9 4 E-6 | 2 . 5 3 7 E-4 | 4.233E-4 | 1.765E-5 | 0.0016 | 1.864E-5 | |||||||
Lasso | 0.0364 | 0.0048 | 7 . 4 3 6 E-5 | 0.0036 | 0.5630 | 0.0033 | |||||||
50 %PI Thres. | DegreeCox | 3.332E-4 | 5.284E-5 | 0.0076 | 0.0084 | 4.394E-4 | 0.0090 | 5 . 7 8 1 E-5 | 1 . 3 0 9 E-4 | 0.0045 | 4 . 3 0 2 E-4 | 5.264E-7 | 7.183E-7 |
Net-Cox | 2.169E-5 | 5.086E-5 | 0.0170 | 0.0179 | 0.0036 | 0.0015 | 1.247E-4 | 3.126E-4 | 0 . 0 0 2 6 | 8.138E-4 | 1 . 1 0 5 E-8 | 1 . 6 3 2 E-7 | |
Ridge | 1 . 7 9 5 E-5 | 0 . 0 0 1 3 | 3 . 1 9 3 E-4 | 0.0029 | 0.0050 | 3.499E-5 | |||||||
Lasso | 0.0720 | 0.0048 | 0.0022 | 0.0193 | 0.6464 | 0.0050 |