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Table 3 Gene set selection results on the cancer datasets for MSI-H versus others classification

From: Integrating gene set analysis and nonlinear predictive modeling of disease phenotypes using a Bayesian multitask formulation

SBMKL on COADREAD

SBMKL on UCEC

SBMTMKL on COADREAD and UCEC

Gene set name

Frequency

Gene set name

Frequency

Gene set name

Frequency

WNT_NONCANONICAL_PATHWAY

0.10

P53DOWNSTREAMPATHWAY

0.92

P53DOWNSTREAMPATHWAY

0.99

TGFBRPATHWAY

0.09

NOTCH_PATHWAY

0.83

NOTCH_PATHWAY

0.92

DELTANP63PATHWAY

0.07

NFAT_TFPATHWAY

0.26

WNT_NONCANONICAL_PATHWAY

0.61

TAP63PATHWAY

0.07

IL5_PATHWAY

0.24

NFAT_TFPATHWAY

0.41

RB_1PATHWAY

0.07

P53REGULATIONPATHWAY

0.24

AR_PATHWAY

0.34

NFAT_3PATHWAY

0.06

CDC42_REG_PATHWAY

0.20

RHOA_PATHWAY

0.21

ATF2_PATHWAY

0.06

AVB3_OPN_PATHWAY

0.15

REG_GR_PATHWAY

0.21

SMAD2_3NUCLEARPATHWAY

0.05

WNT_NONCANONICAL_PATHWAY

0.14

UPA_UPAR_PATHWAY

0.17

P73PATHWAY

0.05

REG_GR_PATHWAY

0.13

BMPPATHWAY

0.17

MYC_ACTIVPATHWAY

0.05

UPA_UPAR_PATHWAY

0.11

RAC1_PATHWAY

0.14

  1. The table displays the top 10 most frequently selected gene sets together with their selection frequencies for three scenarios
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BMC Bioinformatics

ISSN: 1471-2105

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