Table 1 Quality of lrLRs and comparison between LSCplus (SCF = 60) and LSC (SCD = 20)
From: LSCplus: a fast solution for improving long read accuracy by short read alignment
LSCplus | LSC_1_beta | LSC_2 | Raw_Data (rLR) | ||
|---|---|---|---|---|---|
Output lrLR number | 44,497 | 44,497 | 44,491 | \ | |
Mapped lrLR number | 44,216 | 44,112 | 44,110 | 16,947 (rLR) | |
Average length | 601.46bp | 600.36bp | 600.61bp | \ | |
Time consumed | Total | 185s | 832s | 1h 33m 21s | \ |
ECa step | 23s | 546s | \ | \ | |
Sequence identity | SI >0.9 | 71.40 % | 71.38 % | 71.34 % | 0.84 % |
SI >0.8 | 81.56 % | 81.43 % | 81.44 % | 19.02 % | |
SI >0.7 | 84.39 % | 84.28 % | 84.37 % | 37.66 % | |