From: LSCplus: a fast solution for improving long read accuracy by short read alignment
LSCplus | LSC (v1_beta) | LSC (v2) | PacBioToCA | ||
---|---|---|---|---|---|
Output lrLR number | 155,399 | 155,398 | 159,168 | 109,078 | |
Mapped lrLR numbera | 155,305 | 155,286 | 159,000 | 108,170 | |
Average length of lrLRs | 832.21 bp | 831.30 bp | 731.09 bp | 101.28 bp | |
Time consumed | 1 h 52 min | 6 h 52 min | 42 h 35 min | 58 h 57 min | |
Sequence identity | SI ≥ 0.9 | 73.63 % (114,351) | 71.78 % (111,464) | 74.62 % (118,654) | 86.94 % (94,043) |
SI ≥ 0.8 | 78.93 % (122,582) | 78.59 % (122,039) | 80.13 % (127,410) | 92.49 % (100,047) | |
SI ≥ 0.7 | 81.22 % (126,138) | 81.17 % (126,045) | 82.37 % (130,973) | 95.68 % (103,497) |