Table 4 Results of running LoRDEC under different parameter values
From: LSCplus: a fast solution for improving long read accuracy by short read alignment
Parameters | Output lrLRs number | Mapped lrLRs number | Average length of lrLRs | Time consumed | Sequence identity | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
K | Solid | Target | Branch | Error rate | SI ≥ 0.9 | SI ≥ 0.8 | SI ≥ 0.7 | ||||
19 | 3 | 5 | 200 | 0.4 | 164,893 | 152,778 | 736.91 bp | 47 min | 52.06 % (79,533) | 71.20 % (108,778) | 77.20 % (117,949) |
19 | 3 | 10 | 2000 | 0.4 | 164,893 | 153,341 | 737.85 bp | 4 h 46 min | 50.97 % (78,152) | 68.91 % (105,671) | 74.74 % (114,613) |
19 | 3 | 15 | 200 | 0.4 | 164,893 | 153,222 | 737.25 bp | 2 h 30 min | 50.52 % (77,417) | 68.76 % (105,363) | 74.66 % (114,390) |
19 | 3 | 10 | 200 | 0.4 | 164,893 | 153,061 | 737.06 bp | 1 h 42 min | 51.36 % (78,619) | 69.95 % (107,080) | 75.85 % (118,118) |
19 | 3 | 5 | 1000 | 0.4 | 164,893 | 152,936 | 737.36 bp | 1 h 20 min | 52.24 % (79,895) | 70.95 % (108,519) | 76.88 % (117,583) |
19 | 3 | 10 | 5000 | 0.4 | 164,893 | 153,436 | 738.11 bp | 10 h 2 min | 50.67 % (77,760) | 68.43 % (104,998) | 74.33 % (113,896) |
21 | 3 | 5 | 200 | 0.4 | 160,363 | 147,928 | 722.04 bp | 1 h 24 min | 61.44 % (90,932) | 75.62 % (111,904) | 79.75 % (118,021) |
21 | 3 | 10 | 2000 | 0.4 | 160,363 | 148,100 | 723.19 bp | 4 h 07 min | 61.73 % (91,426) | 75.23 % (111,422) | 79.39 % (117,580) |
21 | 3 | 15 | 5000 | 0.4 | 160,363 | 148,114 | 723.78 bp | 16 h 46 min | 61.43 % (91,009) | 74.64 % (110,589) | 78.88 % (116,865) |
21 | 3 | 15 | 1000 | 0.45 | 160,363 | 148,080 | 722.10 bp | 5 h 26 min | 60.46 % (89,537) | 74.23 % (109,933) | 78.68 % (116,511) |
21 | 5 | 15 | 1000 | 0.45 | 159,529 | 146,754 | 722.13 bp | 4 h 39 min | 64.81 % (95,117) | 76.73 % (112,617) | 80.41 % (118,004) |
21 | 2 | 15 | 1000 | 0.45 | 161,025 | 149,055 | 720.70 bp | 6 h 55 min | 54.62 % (87,416) | 71.25 % (106,202) | 76.73 % (114,365) |