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Table 4 Results of running LoRDEC under different parameter values

From: LSCplus: a fast solution for improving long read accuracy by short read alignment

Parameters Output lrLRs number Mapped lrLRs number Average length of lrLRs Time consumed Sequence identity
K Solid Target Branch Error rate SI ≥ 0.9 SI ≥ 0.8 SI ≥ 0.7
19 3 5 200 0.4 164,893 152,778 736.91 bp 47 min 52.06 % (79,533) 71.20 % (108,778) 77.20 % (117,949)
19 3 10 2000 0.4 164,893 153,341 737.85 bp 4 h 46 min 50.97 % (78,152) 68.91 % (105,671) 74.74 % (114,613)
19 3 15 200 0.4 164,893 153,222 737.25 bp 2 h 30 min 50.52 % (77,417) 68.76 % (105,363) 74.66 % (114,390)
19 3 10 200 0.4 164,893 153,061 737.06 bp 1 h 42 min 51.36 % (78,619) 69.95 % (107,080) 75.85 % (118,118)
19 3 5 1000 0.4 164,893 152,936 737.36 bp 1 h 20 min 52.24 % (79,895) 70.95 % (108,519) 76.88 % (117,583)
19 3 10 5000 0.4 164,893 153,436 738.11 bp 10 h 2 min 50.67 % (77,760) 68.43 % (104,998) 74.33 % (113,896)
21 3 5 200 0.4 160,363 147,928 722.04 bp 1 h 24 min 61.44 % (90,932) 75.62 % (111,904) 79.75 % (118,021)
21 3 10 2000 0.4 160,363 148,100 723.19 bp 4 h 07 min 61.73 % (91,426) 75.23 % (111,422) 79.39 % (117,580)
21 3 15 5000 0.4 160,363 148,114 723.78 bp 16 h 46 min 61.43 % (91,009) 74.64 % (110,589) 78.88 % (116,865)
21 3 15 1000 0.45 160,363 148,080 722.10 bp 5 h 26 min 60.46 % (89,537) 74.23 % (109,933) 78.68 % (116,511)
21 5 15 1000 0.45 159,529 146,754 722.13 bp 4 h 39 min 64.81 % (95,117) 76.73 % (112,617) 80.41 % (118,004)
21 2 15 1000 0.45 161,025 149,055 720.70 bp 6 h 55 min 54.62 % (87,416) 71.25 % (106,202) 76.73 % (114,365)
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