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Table 2 Scores of various network inference methods on benchmark datasets

From: CMIP: a software package capable of reconstructing genome-wide regulatory networks using gene expression data

Measurements

ARACNE

CLR

MI

GENIE3

Inferelator

TIGRESS

CMIP

AUROC

0.6689

0.7632

0.8004

0.7955

0.7014

0.8048

0.7945

AUPR

0.1465

0.2076

0.3537

0.3033

0.2172

0.3991

0.3637

Average

0.4077

0.4854

0.5771

0.5494

0.4593

0.6020

0.5791

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BMC Bioinformatics

ISSN: 1471-2105

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