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Table 4 Time cost on real data

From: A fast read alignment method based on seed-and-vote for next generation sequencing

Tool Time1(m) Time2(m) Time3(m) Time4(m) Time5(m)
BWA-MEM 4443 7783 8311 8056 9181
Subread 8894 - - - -
FSVA 812 1184 1385 1335 1541
Bowtie2 5191 6384 6998 6694 7781
  1. Time cost (minutes) of BWA-MEM, Subread, FSVA and Bowtie2 on real data. These tools all ran on a single core Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz