Feature category | Number of features | Function (Matlab or Python) |
---|---|---|
AA compositiona | ||
AA compositiona | 20 | aacount (sequence) |
AA functional propertya | 5 | codon2aa (sequence) |
Protein length | 1 | length (sequence) |
Scores alignment with consensus region | ||
Self align with consensus region | 1 | selfalign (sequence,CSeq) |
Global alignment score with consensus region | 2 | getIdentity (sequence,CSeq,‘G’) |
Local alignment score with consensus region | 2 | getIdentity (sequence,CSeq,‘L’) |
Protein physico-chemical properties | ||
pI | 1 | isoelectric (sequence) (first returned value) |
Charge | 1 | isoelectric (sequence) (second returned value) |
Nominal mass | 1 | isotopicdist (sequence) |
Aromaticity | 1 | ProtParam.ProteinAnalysis (seq).aromaticity() (python) |
Instability | 1 | ProtParam.ProteinAnalysis (seq).instability_index() (python) |
Hydropathy | 1 | ProtParam.ProteinAnalysis (seq).gravy() (python) |
Entropy | 1 | function developed in python |
Energy | 1 | function developed in python |