Table 4 Comparison of the methods for pre-miRNA ab initio prediction using sequence HSD (A) and MMD (B). The results of Mirnacle are with thresholds (0.3, 0.3, 0.7) for the three stages, respectively
Method | Sensitivity | Selectivity | GM |
|---|---|---|---|
(A) Results for the Homo sapiens sequence (HSD): | |||
Mirnacle | 100 | 29.52 | 54.33 |
TVM | 100 | 1.43 | 11.95 |
miRNAFold | 100 | 0.89 | 9.43 |
miRPara | 98 | 0.93 | 9.54 |
CID-miRNA | 38 | 0.69 | 5.12 |
VMir | 100 | 0.56 | 7.48 |
(B) Results for the Mus musculus sequence (MMD): | |||
Mirnacle | 98.61 | 47.33 | 68.31 |
TVM | 100 | 4.13 | 20.32 |
miRNAFold | 98.59 | 7.71 | 27.57 |
miRPara | 98.59 | 5.34 | 22.94 |
CID-miRNA | 29.58 | 0.82 | 4.92 |
VMir | 88.73 | 2.93 | 16.12 |