Table 1 Comparison among SIMBA and other software
From: SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
SIMBA | Galaxy | CLC | Lasergene | |
|---|---|---|---|---|
User-friendly interface | X | X | X | X |
De novo assembly | X | X | X | X |
De novo assembly with multiple algorithms | X | X | ||
Scaffolding by reference | X | X | X | X |
Assembly quality evaluation | X | |||
Scaffolding by optical mapping | X | |||
Gap closing | X | X | X | X |
Genome visualization | X | |||
Free and open source | X | X | ||
Web tool | X | X | ||
Multiple users in parallel | X | X | ||
Free sequence edition | X | X | ||
Annotation support | X | X | X |