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Table 1 Comparison among SIMBA and other software

From: SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology

  SIMBA Galaxy CLC Lasergene
User-friendly interface X X X X
De novo assembly X X X X
De novo assembly with multiple algorithms X X   
Scaffolding by reference X X X X
Assembly quality evaluation X    
Scaffolding by optical mapping X    
Gap closing X X X X
Genome visualization X    
Free and open source X X   
Web tool X X   
Multiple users in parallel X X   
Free sequence edition    X X
Annotation support   X X X