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Table 2 Attributes extracted from a H/ACA box snoRNA candidate

From: SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identification

mfeC

MFE of the secondary structure with restrictions

 

in RNAfold

A C,G U,GC

AC, GU and GC content

zscore

zscore computed by RNAz

Hscore

Score of the H box

ACAscore

Score of the ACA box

LseqSize

Number of nucleotides before the H box

RseqSize

Number of nucleotides between H and ACA boxes

LloopSC

Lenght of the loop, where we find the pocket region

 

containing the target region, near to the H box

RloopSC

Length of the loop, where we find the pocket region

 

containing the target region, more close to the

 

ACA box

LloopYC

Symmetry of the loop containing the pocket region

 

near to the H box

RloopYC

Symmetry of the loop containing the pocket region

 

near to the ACA box

LloopSym

Symmetry of all loops before H box

RloopSym

Symmetry of all loops before ACA box