Table 3 Attributes extracted from a C/D box snoRNA candidate
From: SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identification
mfe | MFE of the secondary structure without restrictions |
in RNAfold | |
mfeC | MFE of the secondary structure with restrictions |
in RNAfold | |
E avg | MFE average |
E stdv | MFE tandard deviation |
ls | Length of the terminal stem |
Dcd | Distance between C and D boxes |
C score | score of the C box |
D score | score of the D box |
GC | GC content |
zscore | zscore obtained by RNAz |
bpStem | Number of base pairs on the terminal stem |
l u5 | Number of unpaired nucleotides inside the stem |
before C box | |
l u3 | Number of unpaired nucleotides inside the stem |
after D box | |
stemUnpCbox | Number of unpaired nucleotides between the stem |
and the C box | |
stemUnpDbox | Number of unpaired nucleotides between the D box |
and the stem |