feature extraction method | Window size | CD-5p | CD-3p | ||||||
---|---|---|---|---|---|---|---|---|---|
Sn | Sp | Ac | Mc | Sn | Sp | Ac | Mc | ||
PHDCleav (sequence) | 8 | 0.0137 | 0.0008 | 0.0074 | 0.0036 | 0.0072 | 0.0015 | 0.0094 | 0.0066 |
10 | 0.0184 | 0.0004 | 0.0111 | 0.0018 | 0.0044 | 0.0005 | 0.0072 | 0.0024 | |
12 | 0.0208 | 0.0001 | 0.0223 | 0.0003 | 0.0078 | 0.0011 | 0.0031 | 0.0046 | |
14 | 0.0293 | 0.0009 | 0.0174 | 0.0037 | 0.0065 | 0.0007 | 0.0048 | 0.0029 | |
PHDCleav (structure) | 8 | 0.0042 | 0.0039 | 0.0067 | 0.0155 | 0.0187 | 0.0013 | 0.0091 | 0.0062 |
10 | 0.0026 | 0.0043 | 0.0088 | 0.0177 | 0.0100 | 0.0014 | 0.0050 | 0.0059 | |
12 | 0.0042 | 0.0027 | 0.0034 | 0.0109 | 0.0051 | 0.0011 | 0.0024 | 0.0045 | |
14 | 0.0047 | 0.0031 | 0.0034 | 0.0125 | 0.0039 | 0.0012 | 0.0014 | 0.0047 | |
Extended PHDCleav | 8 | 0.0029 | 0.0032 | 0.0063 | 0.0128 | 0.0123 | 0.0025 | 0.0043 | 0.0103 |
10 | 0.0030 | 0.0038 | 0.0061 | 0.0154 | 0.0064 | 0.0019 | 0.0016 | 0.0075 | |
12 | 0.0040 | 0.0033 | 0.0050 | 0.0136 | 0.0054 | 0.0015 | 0.0011 | 0.0059 | |
14 | 0.0059 | 0.0027 | 0.0016 | 0.0108 | 0.0032 | 0.0013 | 0.0010 | 0.0052 | |
LBSizeCleav (k=1) | 8 | 0.0030 | 0.0025 | 0.0044 | 0.0115 | 0.0100 | 0.0004 | 0.0074 | 0.0019 |
10 | 0.0022 | 0.0015 | 0.0013 | 0.0064 | 0.0078 | 0.0011 | 0.0015 | 0.0042 | |
12 | 0.0050 | 0.0024 | 0.0010 | 0.0090 | 0.0077 | 0.0015 | 0.0002 | 0.0051 | |
14 | 0.0075 | 0.0035 | 0.0010 | 0.0132 | 0.0036 | 0.0007 | 0.0002 | 0.0026 | |
LBSizeCleav (k=2) | 8 | 0.0042 | 0.0018 | 0.0008 | 0.0066 | 0.0053 | 0.0010 | 0.0036 | 0.0041 |
10 | 0.0038 | 0.0020 | 0.0009 | 0.0076 | 0.0034 | 0.0010 | 0.0010 | 0.0039 | |
12 | 0.0051 | 0.0029 | 0.0016 | 0.0115 | 0.0042 | 0.0017 | 0.0008 | 0.0063 | |
14 | 0.0051 | 0.0028 | 0.0012 | 0.0107 | 0.0043 | 0.0008 | 0.0002 | 0.0024 | |
LBSizeCleav (k=3) | 8 | 0.0025 | 0.0013 | 0.0008 | 0.0050 | 0.0070 | 0.0010 | 0.0021 | 0.0042 |
10 | 0.0039 | 0.0022 | 0.0012 | 0.0086 | 0.0064 | 0.0013 | 0.0006 | 0.0048 | |
12 | 0.0063 | 0.0031 | 0.0012 | 0.0119 | 0.0039 | 0.0015 | 0.0005 | 0.0055 | |
14 | 0.0060 | 0.0033 | 0.0015 | 0.0130 | 0.0073 | 0.0016 | 0.0003 | 0.0046 | |
LBSizeCleav (k=4) | 8 | 0.0029 | 0.0016 | 0.0009 | 0.0064 | 0.0066 | 0.0020 | 0.0030 | 0.0078 |
10 | 0.0046 | 0.0025 | 0.0011 | 0.0095 | 0.0071 | 0.0014 | 0.0006 | 0.0049 | |
12 | 0.0061 | 0.0032 | 0.0014 | 0.0124 | 0.0033 | 0.0011 | 0.0007 | 0.0041 | |
14 | 0.0051 | 0.0030 | 0.0015 | 0.0120 | 0.0088 | 0.0025 | 0.0002 | 0.0082 | |
LBSizeCleav (k=5) | 8 | 0.0029 | 0.0017 | 0.0009 | 0.0066 | 0.0062 | 0.0021 | 0.0031 | 0.0082 |
10 | 0.0055 | 0.0029 | 0.0013 | 0.0113 | 0.0032 | 0.0011 | 0.0005 | 0.0042 | |
12 | 0.0051 | 0.0029 | 0.0015 | 0.0114 | 0.0029 | 0.0011 | 0.0009 | 0.0044 | |
14 | 0.0047 | 0.0029 | 0.0016 | 0.0116 | 0.0076 | 0.0023 | 0.0002 | 0.0076 |