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Fig. 1 | BMC Bioinformatics

Fig. 1

From: The Lair: a resource for exploratory analysis of published RNA-Seq data

Fig. 1

Workflow of The Lair system for distributing analysis of sequence read archive data. The inputs to the system are sets of two files: config.json file that specifies parameters to be used during the processing of each experiment and a design matrix for each experiment that specifies its structure. A master Snakemake workflow organizes a series of computations starting with downloading of data to the sequence read archive and ending with deployment of a sleuth analyses to a Shiny server. Finally, a website generated from information in the config.json files links to objects in the Shiny server thus providing access to the processed experiments

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