From: MeFiT: merging and filtering tool for illumina paired-end reads for 16S rRNA amplicon sequencing
 |  | Merging | Quality Filtering | ||
---|---|---|---|---|---|
Single Step | Tool | Merge non-overlapping paired-end reads | AvgQ | Expected Error | |
MeFiT | ✔ | CASPER | ✔ | ✔ | ✔ |
Qiime v1.9.1 | ✗ | fastq-join/SeqPrep | ✗ | ✔ | ✗ |
mothur v1.37 | ✗ | make.contigs | ✗ | ✔ | ✗ |
usearch v8.0 | ✗ | fastq_mergepairs | ✗ | ✗ | ✔ |