features | Ours | Chang, et al. (2008)a | Nguyen, et al. (2006)a | Garg, et al. (2005)a | Wang, et al. (2005)a | Yuan, et al. (2004)a | Ahmad, et al. (2003)a |
---|---|---|---|---|---|---|---|
PSSM | Yes | Yes | Yes | Yes | Yes | No | No |
AAindex (PCPs) | Yes | No | No | No | No | No | No |
sequence length | Yes | Yes | No | No | Yes | No | No |
amino acid composition | No | No | No | No | No | Yes | Yes |
secondary structure | No | No | No | Yes | No | No | No |
regression tool | one-stage SVR | two-stage SVR | two-stage SVR | NN | MLR | one-stage SVR | NN |
MAE (%) | 14.11 | 14.80 | 15.70 | 15.90 | 16.20 | 18.50 | 18.80 |
CC | 0.69 | 0.68 | 0.66 | 0.65 | 0.64 | 0.52 | 0.48 |