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Table 3 The feature usage and a performance summary from other studies that used Barton502 as a dataset

From: A hydrophobic spine stabilizes a surface-exposed α-helix according to analysis of the solvent-accessible surface area

features

Ours

Chang,

et al. (2008)a

Nguyen,

et al. (2006)a

Garg,

et al. (2005)a

Wang,

et al. (2005)a

Yuan,

et al. (2004)a

Ahmad,

et al. (2003)a

PSSM

Yes

Yes

Yes

Yes

Yes

No

No

AAindex (PCPs)

Yes

No

No

No

No

No

No

sequence length

Yes

Yes

No

No

Yes

No

No

amino acid composition

No

No

No

No

No

Yes

Yes

secondary structure

No

No

No

Yes

No

No

No

regression tool

one-stage SVR

two-stage SVR

two-stage SVR

NN

MLR

one-stage SVR

NN

MAE (%)

14.11

14.80

15.70

15.90

16.20

18.50

18.80

CC

0.69

0.68

0.66

0.65

0.64

0.52

0.48

  1. aMAE and CC are from the original paper