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Table 4 Predicting GTP binding sites in the transport proteins with different feature sets

From: Incorporating efficient radial basis function networks and significant amino acid pairs for predicting GTP binding sites in transport proteins

  Feature set True Positive False Positive True Negative False Negative Sens Spec Acc MCC
5-fold BINARY 261 1951 6823 51 83.7 77.8 78 0.26
BLOSUM62 232 412 8362 80 74.4 95.3 94.6 0.49
PAM250 246 341 8433 66 78.8 96.1 95.5 0.56
PSSM 260 351 8423 52 83.3 96 95.6 0.58
PSSM + SAAPs 261 348 8426 51 83.7 96 95.6 0.58
Indept BINARY 49 100 1610 3 94.2 94.2 94.2 0.54
BLOSUM62 49 98 1612 3 94.2 94.3 94.3 0.54
PAM250 49 71 1639 3 94.2 95.8 95.9 0.62
PSSM 48 23 1687 4 92.3 98.7 98.5 0.78
PSSM + SAAPs 49 20 1690 3 94.2 98.8 98.7 0.81