Incorporating efficient radial basis function networks and significant amino acid pairs for predicting GTP binding sites in transport proteins

Table 4 Predicting GTP binding sites in the transport proteins with different feature sets

	Feature set	True Positive	False Positive	True Negative	False Negative	Sens	Spec	Acc	MCC
5-fold	BINARY	261	1951	6823	51	83.7	77.8	78	0.26
	BLOSUM62	232	412	8362	80	74.4	95.3	94.6	0.49
	PAM250	246	341	8433	66	78.8	96.1	95.5	0.56
	PSSM	260	351	8423	52	83.3	96	95.6	0.58
	PSSM + SAAPs	261	348	8426	51	83.7	96	95.6	0.58
Indept	BINARY	49	100	1610	3	94.2	94.2	94.2	0.54
	BLOSUM62	49	98	1612	3	94.2	94.3	94.3	0.54
	PAM250	49	71	1639	3	94.2	95.8	95.9	0.62
	PSSM	48	23	1687	4	92.3	98.7	98.5	0.78
	PSSM + SAAPs	49	20	1690	3	94.2	98.8	98.7	0.81

ISSN: 1471-2105