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Table 1 AUC, Success rate and FPR for varying flank size with RBF and sigmoid kernels (C value used is 1000)

From: Predicting MoRFs in protein sequences using HMM profiles

 

AUC

 

Success rate

 

FPR @ 0.222 TPR

 

RBF kernel

Sigmoid kernel

RBF kernel

Sigmoid kernel

RBF kernel

Sigmoid kernel

Gamma

0.0038

5

0.0038

5

0.0038

5

0.0038

5

0.0038

5

0.0038

5

Flank size

1

0.658

0.587

0.570

0.648

0.680

0.660

0.658

0.701

0.057

0.160

0.090

0.070

2

0.659

0.597

0.590

0.653

0.651

0.737

0.653

0.680

0.053

0.190

0.088

0.065

3

0.650

0.600

0.580

0.650

0.640

0.770

0.660

0.660

0.047

0.180

0.080

0.065

4

0.660

0.606

0.580

0.340

0.640

0.770

0.589

0.370

0.053

0.180

0.090

0.380

5

0.660

0.600

0.587

0.650

0.669

0.720

0.618

0.600

0.050

0.180

0.098

0.060

6

0.659

0.600

0.589

0.648

0.649

0.749

0.618

0.572

0.053

0.180

0.098

0.066

7

0.664

0.601

0.588

0.340

0.644

0.756

0.642

0.460

0.051

0.170

0.090

0.360

8

0.652

0.602

0.595

0.350

0.653

0.740

0.600

0.470

0.059

0.170

0.095

0.360

9

0.646

0.584

0.582

0.618

0.653

0.699

0.584

0.390

0.061

0.180

0.010

0.073

10

0.644

0.587

0.640

0.590

0.656

0.699

0.432

0.590

0.065

0.175

0.077

0.100

11

0.645

0.605

0.640

0.639

0.668

0.749

0.604

0.390

0.066

0.160

0.105

0.080

12

0.640

0.600

0.600

0.630

0.670

0.810

0.630

0..36

0.070

0.160

0.090

0.080

  1. Bold numbers indicate the best performance metrics for different kernels, gamma values and Flank sizes