UQlust: combining profile hashing with linear-time ranking for efficient clustering and analysis of big macromolecular data

Table 4 Clustering-based RNA model quality assessment for FARNA

Target	Best RMSD	10-means (3D)	Rpart (10,60)
2a43	4.5	5.3	4.6
1a4d	3.8	11.9	6.0
1esy	2.9	3.4	3.3
1kka	3.6	4.5	4.5
1l2x	3.9	4.8	4.0
1q9a	4.1	4.4	4.7

RMSD (Ang) between the native structure and the closest of top 5 centroids, obtained using uQlust:K-means with RMSD distance (third column) or uQlust:Rpart with Hamming distance and RNA-SS-LW profile (last column), are compared with the best possible prediction, i.e., RMSD for the best model in a subset of 500 decoys for each target from [19]

ISSN: 1471-2105