Table 4 The comparison of four methods on three gene modules
From: Prior knowledge guided eQTL mapping for identifying candidate genes
Gene modules | Method | Mean | # of | Proportion | # of | # of eQTLs | Proportion |
|---|---|---|---|---|---|---|---|
| Â | Â | Squared | predictors | of variance | eQTLs | with known | of cis eQTLs |
| Â | Â | Error | Â | explained(%) | Â | gene locations | (%) |
Plum1 | LassoM | 1750411 | 23 | 56.01 | 621 | 69 | 17.39 |
| Â | LassoMP | 1639614 | 9 | 52.13 | 243 | 27 | 29.63 |
Skyblue | LassoM | 2918151 | 47 | 52.65 | 1269 | 47 | 9.57 |
| Â | LassoMP | 2801753 | 2 | 36.68 | 54 | 4 | 50.00 |
Saddlebrown | LassoM | 2919870 | 14 | 46.73 | 378 | 28 | 21.43 |
| Â | LassoMP | 2675651 | 3 | 47.23 | 81 | 21 | 100.00 |