Table 9 Top 10 eQTLs identified using LassoMPs on Darkgrey, Saddlowbrown, Darkgreen and Yellow gene modules
From: Prior knowledge guided eQTL mapping for identifying candidate genes
| Â | Probes | SNP | Location | Correlation |
|---|---|---|---|---|
| Â | Â | Â | Â | coefficient |
Darkgrey | Contig3156_s_at | HZ58F11r_at | 5H@145.4cm | 0.505 |
| Â | Contig3155_s_at | HZ58F11r_at | 5H@145.4cm | 0.350 |
| Â | Contig1385_at | HZ58F11r_at | 5H@145.4cm | 0.264 |
| Â | Contig3157_at | HZ58F11r_at | 5H@145.4cm | 0.262 |
| Â | Contig19929_at | HZ58F11r_at | 5H@145.4cm | 0.259 |
| Â | Contig3151_at | HZ58F11r_at | 5H@145.4cm | 0.256 |
| Â | Contig11361_at | HZ58F11r_at | 5H@145.4cm | 0.196 |
| Â | Contig8307_s_at | HZ58F11r_at | 5H@145.4cm | 0.147 |
| Â | Contig6701_s_at | HZ58F11r_at | 5H@145.4cm | 0.143 |
| Â | Contig5469_at | HZ58F11r_at | 5H@145.4cm | 0.108 |
Saddlebrown | Contig2210_at | Contig13249_at | 7H@47.1cm | -0.642 |
| Â | Contig2212_s_at | Contig13249_at | 7H@47.1cm | -0.612 |
| Â | Contig2209_at | Contig13249_at | 7H@47.1cm | -0.411 |
| Â | Contig2214_s_at | Contig13249_at | 7H@47.1cm | -0.376 |
| Â | HVSMEm0003C15r2_s_at | Contig13249_at | 7H@47.1cm | -0.309 |
| Â | Contig1637_s_at | Contig13249_at | 7H@47.1cm | -0.288 |
| Â | Contig1637_at | Contig13249_at | 7H@47.1cm | -0.284 |
| Â | Contig2787_s_at | Contig13249_at | 7H@47.1cm | -0.284 |
| Â | Contig13350_at | Contig13249_at | 7H@47.1cm | -0.257 |
| Â | EBem10_SQ002_I10_s_at | Contig13249_at | 7H@47.1cm | -0.170 |
Darkgreen | Contig2170_at | Contig4572_at | 7H@83.5cm | -0.807 |
| Â | Contig8722_at | Contig4572_at | 7H@83.5cm | -0.199 |
| Â | Contig11240_at | Contig4572_at | 7H@83.5cm | -0.149 |
| Â | Contig21643_at | Contig4572_at | 7H@83.5cm | -0.149 |
| Â | Contig3886_at | Contig4572_at | 7H@83.5cm | -0.144 |
| Â | Contig23697_at | Contig4572_at | 7H@83.5cm | -0.128 |
| Â | Contig13049_at | Contig4572_at | 7H@83.5cm | -0.106 |
| Â | Contig13799_at | Contig4572_at | 7H@83.5cm | -0.098 |
| Â | Contig20_at | Contig4572_at | 7H@83.5cm | -0.089 |
| Â | Contig1315_s_at | Contig4572_at | 7H@83.5cm | 0.036 |
Yellow | Contig8002_at | Contig1791_x_at | 2H@153.5cm | 0.288 |
| Â | Contig20602_at | Contig1791_x_at | 2H@153.5cm | 0.285 |
| Â | Contig11328_at | Contig1791_x_at | 2H@153.5cm | 0.266 |
| Â | Contig14754_at | Contig1791_x_at | 2H@153.5cm | 0.227 |
| Â | Contig23817_at | Contig1791_x_at | 2H@153.5cm | 0.205 |
| Â | Contig8052_at | Contig1791_x_at | 2H@153.5cm | 0.200 |
| Â | Contig23584_at | Contig1791_x_at | 2H@153.5cm | 0.197 |
| Â | HV_CEa0006L03r2_at | Contig1791_x_at | 2H@153.5cm | 0.190 |
| Â | Contig10957_at | Contig1791_x_at | 2H@153.5cm | 0.188 |
| Â | HA14H02r_at | Contig1791_x_at | 2H@153.5cm | 0.185 |