Table 1 Algorithms and their parameters
From: PROPER: global protein interaction network alignment through percolation matching
Algorithm | Commandline arguments | Parameters |
|---|---|---|
IsoRank [28] | –K 50 –thresh 1e-5 –alpha α –maxveclen 1000000 | α∈{0.3,0.5,0.6,0.7} |
do not require arguments | none | |
L-GRAAL [23] | –a α –I 50 | α∈{0.3,0.5,0.7} |
MAGNA++(S 3) [34] | –m S3 –p 1000 –n 15000 –f 5 –a α –t 16 | α∈{0.3,0.5,0.7} |
MAGNA++(EC) [34] | –m EC –p 1000 –n 15000 –f 5 –a α –t 16 | α∈{0.3,0.5,0.7} |
SPINAL I [35] | –mode -I –alpha α | α∈{0.3,0.5,0.7} |
SPINAL II [35] | –mode -II –alpha α | α∈{0.3,0.5,0.7} |