Skip to main content

Advertisement

Table 4 The performance comparison between the students and MicroPIE on 12 characters in 46 taxonomic descriptions

From: Microbial phenomics information extractor (MicroPIE): a natural language processing tool for the automated acquisition of prokaryotic phenotypic characters from text sources

Character Student Output MicroPIE Output
Relaxed_P Relaxed_R Relaxed_F1 Relaxed_P Relaxed_R Relaxed_F1
Motility 0.35 0.25 0.29 0.89 0.86 0.87
Pigment Compounds 0.07 0.13 0.09 1.00 0.96 0.98
pH Minimum 0.58 0.75 0.65 0.91 0.91 0.91
pH Optimum 0.72 0.59 0.65 0.96 1.00 0.98
pH Maximum 0.60 0.79 0.68 0.91 0.95 0.93
Temperature Minimum 0.67 0.35 0.46 0.92 0.87 0.90
Temperature Optimum 0.63 0.21 0.31 1.00 0.88 0.94
Temperature Maximum 0.75 0.34 0.47 0.95 0.88 0.91
Aerophilicity 0.52 0.55 0.53 0.71 0.77 0.74
Antibiotic Sensitivity 0.57 0.37 0.45 0.94 0.87 0.90
Antibiotic Resistant 0.91 0.70 0.79 0.98 0.80 0.88
Fermentation Products 0.47 0.28 0.35 0.69 0.69 0.69