Table 2 Description and availability of the mix data set. A detailed description of these data can be found in the Additional file 1. Non-available references are denoted by ’NA’
From: acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
Species name | Ref. | Strain availability |
|---|---|---|
Herbinix luporum SD1DT | [43] | Prof. Dr. W. Schwarz, Prof. Dr. W. Liebel, Dr. V. Zverlov, Dr. D. Koeck, Technische Universität München, Institute for Microbiology, Munich, Germany |
Clostridium sp. hoe 37/3 | NA | |
Propionispora sp. 2/2-37 | [43] | |
Proteiniborus sp. DW1 | NA | Prof. Dr. H. König, Dr. K.G. Cibis, Johannes Gutenberg-University, Institute for Microbiology and Wine Research, Mainz, Germany |
Peptoniphilaceae sp. SG1.4B | [44] | |
Methanobacterium formicicum MFT | [45] | |
Methanobacterium formicicum Mb9 | NA | |
Sporanaerobacter sp. PP17-6a | NA | Dr. M. Klocke and Dr. S. Hahnke, Leibniz-Institut für Agrartechnik Potsdam-Bornim e.V. (ATB), Department of Bioengineering, Potsdam, Germany |
Methanobacterium bourgensis HAW | NA | Prof. Dr. Scherer, Dr. S. Off, Dr. Y.S. Kim, University of Applied Sciences Hamburg (HAW), Faculty Life Sciences/Research Center ’Biomass Utilization Hamburg’, Hamburg, Germany |