Table 3 Acdc evaluation of contamination detection performance. Entries depict the number of correctly identified clean and contaminated samples with additional information about false predictions in parentheses
From: acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
Data set | Identified clean samples | Identified contaminated samples |
|---|---|---|
simulated | 4/7 (3 warnings) | 10/11 (1 warning) |
mix | 0/0 | 8/9 (1 warning) |
benchmark | 0/0 | 22/30 (6 warnings, 2 clean) |
mdm | 150/201 (39 warnings, 12 contaminated) | 0/0 |