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Table 3 Acdc evaluation of contamination detection performance. Entries depict the number of correctly identified clean and contaminated samples with additional information about false predictions in parentheses

From: acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data

Data set Identified clean samples Identified contaminated samples
simulated 4/7 (3 warnings) 10/11 (1 warning)
mix 0/0 8/9 (1 warning)
benchmark 0/0 22/30 (6 warnings, 2 clean)
mdm 150/201 (39 warnings, 12 contaminated) 0/0